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qsubscripts:batch

Basic Batch Job

#!/bin/sh

# On Rosalind STDERR and STDOUT go to the same file by default.
# If you want them to go to separate files add the following line
#$ -j n

# To explicitly specify where you want STDOUT and STDERR to go
#$ -o ~/sge-out
#$ -e ~/sge-out

# Alternatively you can have these go the current directory with the following.
#$ -cwd

# How much memory do you need?
#$ -l h_vmem=2G

# Get email alerts when your job begins and ends
#$ -M <YOUR EMAIL ADDRESS>
#$ -m be

# Which queues would you like to submit to?
#$ -q HighMemLongterm.q,HighMemShortterm.q,LowMemLongterm.q,LowMemShortterm.q

# load any modules you need 
module load general/R/3.2.1

# Run whatever you want to run.  Am sleeping so you have time to see
# the jobs with qstat
sleep 5
echo $HOSTNAME
qsubscripts/batch.txt · Last modified: 2017/03/21 22:28 by admin